User Manual

Version:1.0.0 Release:1.0.0 Date:Apr 30, 2018

This manual explains how to use this package to analyse image of root system architecture. It thus focus on the highest-level functions designed for end-user, and requires very little experience in computer science.

For a complete reference guide of all the package content, see rhizoscan.

• Root image analysis with python
  • Step by step image analysis
  • Using the arabidopsis pipeline
• Root image analysis with visualea
  • Analysis of one root image with visualea
  • Analysis of an image database with visualea
  • Visualisation of the extracted root system with visualea
  • Root image analysis with python
• The image pipeline
  • The arabidopsis pipeline
• Image Database
  • Database file system
  • Database operations